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GrainGenes Marker Report: POPA1_0670

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Locus	POPA1_0670
Type	SNP
Synonym	Other name 12_10670 BOPA2_12_10670 Synonym 12_10670
Chromosome	4H
Chromosome Arm	4HL
Map	Barley, 2012 9KSNP 4H 81.2 Hordeum-OPA-2009-4H 85.04 Hordeum-OPA123-2008-4H 85.04 Hordeum-OPAConsensus-2011-4H 94.07 Hordeum-OWB-OPA2008-4H 83.148
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Map Data	Barley, 2012 9KSNP Barley, OPA 2009, Consensus Barley, OPA 2011, Consensus Barley, OPA123-2008, Consensus Barley, OWB, OPA2008
Species	Hordeum vulgare
Probe	HAR35_16787 i_12_10670
Reference	Comadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392. Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582. Szucs P et al. (2009) An Integrated Resource for Barley Linkage Map and Malting Quality QTL Alignment The Plant Genome 2:134-140.
Data Source	Close, Timothy J.
Remark	[ Hide all but 1 of 10 ] Marker name in barley Pilot OPA1 = 1_0670 Marker name in barley OPA1 = 12_10670 Original SNP name = 4555-499 Most representative HarvEST:Barley Assembly #32 Unigene = 4555 Most representative HarvEST:Barley Assembly #35 Unigene = 16787 HarvEST Unigene 35 Probe Set = Contig6428_s_at Unigene 35 Rice Locus = LOC_Os02g03740 Marker name in barley OPA2 = 12_10670 Description for best rice BLAST hit to Unigene 35 member = protein glutamine amidotransferase subunit pdxT, putative, expressed; E value = 5E-67 BLAST hit in the rice genome = glutamine amidotransferase subunit pdxT, putative, expressed
Probe for Locus	HAR35_16787
Locus	POPA1_0670
General Remarks	Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type	cDNA
Source Species	Hordeum vulgare