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GrainGenes Marker Report: POPA1_0674

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Locus	POPA1_0674
Type	SNP
Synonym	Other name 12_10674 BOPA2_12_10674 Synonym 12_10674
Chromosome	5H
Chromosome Arm	5HL
Map	Hordeum-OPA-2009-5H 91.56 Hordeum-OPA123-2008-5H 91.56 Hordeum-OPAConsensus-2011-5H 80.18 Hordeum-OWB-OPA2008-5H 107.178
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Map Data	Barley, OPA 2009, Consensus Barley, OPA 2011, Consensus Barley, OPA123-2008, Consensus Barley, OWB, OPA2008
Species	Hordeum vulgare
Probe	HAR35_17043 i_12_10674
Reference	Comadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392. Szucs P et al. (2009) An Integrated Resource for Barley Linkage Map and Malting Quality QTL Alignment The Plant Genome 2:134-140. Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Data Source	Close, Timothy J.
Remark	[ Hide all but 1 of 11 ] Marker name in barley Pilot OPA1 = 1_0674 Marker name in barley OPA1 = 12_10674 Original SNP name = 4599-425 Most representative HarvEST:Barley Assembly #32 Unigene = 4599 Most representative HarvEST:Barley Assembly #35 Unigene = 17043 HarvEST Unigene 35 Probe Set = Contig6316_s_at Unigene 35 Rice Locus = LOC_Os09g29810 Description for best rice BLAST hit to Unigene 35 member = retrotransposon protein, putative, unclassified, expressed; E value = 1E-25 Marker name in barley OPA2 = 12_10674 Description for best rice BLAST hit to Unigene 35 member = protein retrotransposon protein, putative, unclassified, expressed; E value = 1E-25 BLAST hit in the rice genome = retrotransposon protein, putative, unclassified, expressed
Probe for Locus	HAR35_17043
Locus	POPA1_0674
General Remarks	Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type	cDNA
Source Species	Hordeum vulgare