Query (optional)   in Class  All Allele Author Colleague Collection Assembly Gene Gene Class Gene Product Germplasm Image Journal Keyword Library Locus Map Map Data Marker Pathology Polymorphism Probe Protein QTL Rearrangement Reference Sequence Species Trait Trait Study Two Point Data  

---

GrainGenes Marker Report: POPA1_0687

[Submit comment/correction]

Locus	POPA1_0687
Type	SNP
Synonym	Other name 11_10687 BOPA1_11_10687 BOPA1_4671-856 Synonym 11_10687
Chromosome	7H
Chromosome Arm	7HL
Map	Barley, 2012 9KSNP 7H 127.5 Hordeum-OPA-2009-7H 140.99 Hordeum-OPA123-2008-7H 140.99 Hordeum-OPAConsensus-2011-7H 139.9
	[ Show Nearby Loci ]
Map Data	Barley, 2012 9KSNP Barley, OPA 2009, Consensus Barley, OPA 2011, Consensus Barley, OPA123-2008, Consensus
Species	Hordeum vulgare
Probe	HAR35_17044 i_11_10687
Reference	Comadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392. Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Data Source	Close, Timothy J.
Remark	[ Hide all but 1 of 11 ] Marker name in barley Pilot OPA1 = 1_0687 Marker name in barley OPA1 = 11_10687 Original SNP name = 4671-856 Most representative HarvEST:Barley Assembly #32 Unigene = 4671 Most representative HarvEST:Barley Assembly #35 Unigene = 17044 HarvEST Unigene 35 Probe Set = Contig6406_at; Contig6407_s_at Unigene 35 Rice Locus = LOC_Os08g23150 Description for best rice BLAST hit to Unigene 35 member = indole-3-glycerol phosphate synthase, chloroplast precursor, putative, expressed; E value = 1E-165 HarvEST Unigene 35 Probe Set = Contig6406_at, Contig6407_s_at Description for best rice BLAST hit to Unigene 35 member = protein indole-3-glycerol phosphate synthase, chloroplast precursor, putative, expressed; E value = 1E-165 BLAST hit in the rice genome = indole-3-glycerol phosphate synthase, chloroplast precursor, putative, expressed
Probe for Locus	HAR35_17044
Locus	POPA1_0687
General Remarks	Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type	cDNA
Source Species	Hordeum vulgare