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GrainGenes Marker Report: POPA1_0692

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Locus
POPA1_0692
Type
SNP
Synonym
Other name11_10692
BOPA1_11_10692
BOPA1_4717-386
Synonym11_10692
Chromosome
2H
Chromosome Arm
2HL
Map
Barley, 2012 9KSNP 2H58.8
Hordeum-OPA-2009-2H63.53
Hordeum-OPA123-2008-2H63.53
Hordeum-OPAConsensus-2011-2H73.35
[ Show Nearby Loci ]
Map Data
Barley, 2012 9KSNP
Barley, OPA 2009, Consensus
Barley, OPA 2011, Consensus
Barley, OPA123-2008, Consensus
Species
Hordeum vulgare
Probe
HAR35_3425
i_11_10692
Reference
ReferenceComadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392.
ReferenceClose TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Data Source
Close, Timothy J.
Remark
[ Hide all but 1 of 10 ]
Marker name in barley Pilot OPA1 = 1_0692
Marker name in barley OPA1 = 11_10692
Original SNP name = 4717-386
Most representative HarvEST:Barley Assembly #32 Unigene = 4717
Most representative HarvEST:Barley Assembly #35 Unigene = 3425
HarvEST Unigene 35 Probe Set = Contig6572_at
Unigene 35 Rice Locus = LOC_Os04g35190
Description for best rice BLAST hit to Unigene 35 member = F-box only protein 9, putative, expressed; E value = 1E-171
Description for best rice BLAST hit to Unigene 35 member = protein F-box only protein 9, putative, expressed; E value = 1E-171
BLAST hit in the rice genome = F-box only protein 9, putative, expressed


Probe for Locus
HAR35_3425
Locus
POPA1_0692
General Remarks
Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type
cDNA
Source Species
Hordeum vulgare