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GrainGenes Marker Report: POPA1_0695

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Locus	POPA1_0695
Type	SNP
Synonym	Other name 11_10695 BOPA1_11_10695 BOPA1_4753-1091 Synonym 11_10695
Chromosome	5H
Chromosome Arm	5HS
Map	Hordeum-OPA-2009-5H 25.23 Hordeum-OPA123-2008-5H 25.23 Hordeum-OPAConsensus-2011-5H 19.82
	[ Show Nearby Loci ]
Map Data	Barley, OPA 2009, Consensus Barley, OPA 2011, Consensus Barley, OPA123-2008, Consensus
Species	Hordeum vulgare
Probe	HAR35_2023 i_11_10695
Reference	Comadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392. Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Data Source	Close, Timothy J.
Remark	[ Hide all but 1 of 11 ] Marker name in barley Pilot OPA1 = 1_0695 Marker name in barley OPA1 = 11_10695 Original SNP name = 4753-1091 Most representative HarvEST:Barley Assembly #32 Unigene = 4753 Most representative HarvEST:Barley Assembly #35 Unigene = 2023 HarvEST Unigene 35 Probe Set = Contig6314_at; Contig6315_at; Contig6315_s_at Unigene 35 Rice Locus = LOC_Os12g43363 Description for best rice BLAST hit to Unigene 35 member = inositolphosphorylceramide-B C-26 hydroxylase, putative, expressed; E value = 1E-125 HarvEST Unigene 35 Probe Set = Contig6314_at, Contig6315_at, Contig6315_s_at Description for best rice BLAST hit to Unigene 35 member = protein inositolphosphorylceramide-B C-26 hydroxylase, putative, expressed; E value = 1E-125 BLAST hit in the rice genome = inositolphosphorylceramide-B C-26 hydroxylase, putative, expressed
Probe for Locus	HAR35_2023
Locus	POPA1_0695
General Remarks	Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type	cDNA
Source Species	Hordeum vulgare