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GrainGenes Marker Report: POPA1_0696

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Locus	POPA1_0696
Type	SNP
Synonym	Other name 12_10696 BOPA2_12_10696 Synonym 12_10696
Chromosome	7H
Chromosome Arm	7HS
Map	Barley, 2012 9KSNP 7H 50.7 Hordeum-OPA-2009-7H 55.63 Hordeum-OPA123-2008-7H 55.63 Hordeum-OPAConsensus-2011-7H 48.06
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Map Data	Barley, 2012 9KSNP Barley, OPA 2009, Consensus Barley, OPA 2011, Consensus Barley, OPA123-2008, Consensus
Species	Hordeum vulgare
Probe	HAR35_2424 i_12_10696
Reference	Comadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392. Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Data Source	Close, Timothy J.
Remark	[ Hide all but 1 of 12 ] Marker name in barley Pilot OPA1 = 1_0696 Marker name in barley OPA1 = 12_10696 Original SNP name = 4767-1374 Most representative HarvEST:Barley Assembly #32 Unigene = 4767 Most representative HarvEST:Barley Assembly #35 Unigene = 2424 HarvEST Unigene 35 Probe Set = Contig6674_at; EBpi07_SQ002_L11_s_at Unigene 35 Rice Locus = LOC_Os06g08720 Description for best rice BLAST hit to Unigene 35 member = serine carboxypeptidase K10B2.2 precursor, putative, expressed; E value = 0 Marker name in barley OPA2 = 12_10696 HarvEST Unigene 35 Probe Set = Contig6674_at, EBpi07_SQ002_L11_s_at Description for best rice BLAST hit to Unigene 35 member = protein serine carboxypeptidase K10B2.2 precursor, putative, expressed; E value = 0 BLAST hit in the rice genome = serine carboxypeptidase K10B2.2 precursor, putative, expressed
Probe for Locus	HAR35_2424
Locus	POPA1_0696
General Remarks	Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type	cDNA
Source Species	Hordeum vulgare