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GrainGenes Marker Report: POPA1_0698

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Locus	POPA1_0698
Type	SNP
Synonym	Other name 12_10698 BOPA2_12_10698 Synonym 12_10698
Chromosome	7H
Chromosome Arm	7HS
Map	Barley, 2012 9KSNP 7H 70.2 Hordeum-OPA-2009-7H 77.85 Hordeum-OPA123-2008-7H 77.85 Hordeum-OPAConsensus-2011-7H 81.78 Hordeum-OWB-OPA2008-7H 80.664
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Map Data	Barley, 2012 9KSNP Barley, OPA 2009, Consensus Barley, OPA 2011, Consensus Barley, OPA123-2008, Consensus Barley, OWB, OPA2008
Species	Hordeum vulgare
Probe	HAR35_16895 i_12_10698
Reference	Comadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392. Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582. Szucs P et al. (2009) An Integrated Resource for Barley Linkage Map and Malting Quality QTL Alignment The Plant Genome 2:134-140.
Data Source	Close, Timothy J.
Remark	[ Hide all but 1 of 13 ] Marker name in barley Pilot OPA1 = 1_0698 Marker name in barley OPA1 = 12_10698 Original SNP name = 4779-1563 Most representative HarvEST:Barley Assembly #32 Unigene = 4779 Most representative HarvEST:Barley Assembly #35 Unigene = 16895 HarvEST Unigene 35 Probe Set = Contig6501_s_at; Contig6502_at Unigene 35 Rice Locus = LOC_Os08g42560 Description for best rice BLAST hit to Unigene 35 member = glycyl-tRNA synthetase 1, mitochondrial precursor, putative, expressed; E value = 0 Marker name in barley OPA2 = 12_10698 Original SNP name = U32_2077_1422 HarvEST Unigene 35 Probe Set = Contig6501_s_at, Contig6502_at Description for best rice BLAST hit to Unigene 35 member = protein glycyl-tRNA synthetase 1, mitochondrial precursor, putative, expressed; E value = 0 BLAST hit in the rice genome = glycyl-tRNA synthetase 1, mitochondrial precursor, putative, expressed
Probe for Locus	HAR35_16895
Locus	POPA1_0698
General Remarks	Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type	cDNA
Source Species	Hordeum vulgare