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GrainGenes Marker Report: POPA1_0700

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Locus	POPA1_0700
Type	SNP
Synonym	Other name 11_10700 BOPA1_11_10700 BOPA1_478-1291 Synonym 11_10700
Chromosome	7H
Chromosome Arm	7HL
Map	Hordeum-OPAConsensus-2011-7H 80.3
	[ Show Nearby Loci ]
Map Data	Barley, OPA 2009, Consensus Barley, OPA 2011, Consensus
Species	Hordeum vulgare
Probe	HAR35_286 i_11_10700
Reference	Comadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392. Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Remark	[ Hide all but 1 of 9 ] Marker name in barley Pilot OPA1 = 1_0700 Marker name in barley OPA1 = 11_10700 Original SNP name = 478-1291 Most representative HarvEST:Barley Assembly #32 Unigene = 478 Most representative HarvEST:Barley Assembly #35 Unigene = 286 HarvEST Unigene 35 Probe Set = Contig149_at; EBem09_SQ002_P17_s_at; rbaal31o13_x_at Unigene 35 Rice Locus = LOC_Os08g03290 Description for best rice BLAST hit to Unigene 35 member = glyceraldehyde-3-phosphate dehydrogenase, cytosolic, putative, expressed; E value = 0 BLAST hit in the rice genome = glyceraldehyde-3-phosphate dehydrogenase, cytosolic, putative, expressed
Probe for Locus	HAR35_286
Locus	POPA1_0700