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GrainGenes Marker Report: POPA1_0702

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Locus
POPA1_0702
Type
SNP
Synonym
Other name11_10702
BOPA1_11_10702
BOPA1_4787-1746
Synonym11_10702
Chromosome
3H
Chromosome Arm
3HL
Map
Hordeum-OPA-2009-3H162.15
Hordeum-OPA123-2008-3H162.15
Hordeum-OPAConsensus-2011-3H169.95
Hordeum-OWB-OPA2008-3H192.725
[ Show Nearby Loci ]
Map Data
Barley, OPA 2009, Consensus
Barley, OPA 2011, Consensus
Barley, OPA123-2008, Consensus
Barley, OWB, OPA2008
Species
Hordeum vulgare
Probe
HAR35_17175
i_11_10702
Reference
ReferenceComadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392.
ReferenceClose TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
ReferenceSzucs P et al. (2009) An Integrated Resource for Barley Linkage Map and Malting Quality QTL Alignment The Plant Genome 2:134-140.
Data Source
Close, Timothy J.
Remark
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Marker name in barley Pilot OPA1 = 1_0702
Marker name in barley OPA1 = 11_10702
Original SNP name = 4787-1746
Most representative HarvEST:Barley Assembly #32 Unigene = 4787
Most representative HarvEST:Barley Assembly #35 Unigene = 17175
HarvEST Unigene 35 Probe Set = Contig6611_at
Unigene 35 Rice Locus = LOC_Os05g32380
Description for best rice BLAST hit to Unigene 35 member = triacylglycerol lipase, putative, expressed; E value = 1E-128
Description for best rice BLAST hit to Unigene 35 member = protein triacylglycerol lipase, putative, expressed; E value = 1E-128
BLAST hit in the rice genome = triacylglycerol lipase, putative, expressed


Probe for Locus
HAR35_17175
Locus
POPA1_0702
General Remarks
Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type
cDNA
Source Species
Hordeum vulgare