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GrainGenes Marker Report: POPA1_0712

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Locus	POPA1_0712
Type	SNP
Synonym	Other name 11_10712 BOPA1_11_10712 BOPA1_4861-640 Synonym 11_10712
Chromosome	4H
Chromosome Arm	4HL
Map	Hordeum-OPA-2009-4H 111.66 Hordeum-OPA123-2008-4H 111.66 Hordeum-OPAConsensus-2011-4H 132.78 Hordeum-OWB-OPA2008-4H 108.515
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Map Data	Barley, OPA 2009, Consensus Barley, OPA 2011, Consensus Barley, OPA123-2008, Consensus Barley, OWB, OPA2008
Species	Hordeum vulgare
Probe	HAR35_17382 i_11_10712
Reference	Comadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392. Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582. Szucs P et al. (2009) An Integrated Resource for Barley Linkage Map and Malting Quality QTL Alignment The Plant Genome 2:134-140.
Data Source	Close, Timothy J.
Remark	[ Hide all but 1 of 11 ] Marker name in barley Pilot OPA1 = 1_0712 Marker name in barley OPA1 = 11_10712 Original SNP name = 4861-640 Most representative HarvEST:Barley Assembly #32 Unigene = 4861 Most representative HarvEST:Barley Assembly #35 Unigene = 17382 HarvEST Unigene 35 Probe Set = Contig6661_s_at; Contig6662_at Unigene 35 Rice Locus = LOC_Os01g34480 Description for best rice BLAST hit to Unigene 35 member = dihydroflavonol-4-reductase, putative, expressed; E value = 1E-151 HarvEST Unigene 35 Probe Set = Contig6661_s_at, Contig6662_at Description for best rice BLAST hit to Unigene 35 member = protein dihydroflavonol-4-reductase, putative, expressed; E value = 1E-151 BLAST hit in the rice genome = dihydroflavonol-4-reductase, putative, expressed
Probe for Locus	HAR35_17382
Locus	POPA1_0712
General Remarks	Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type	cDNA
Source Species	Hordeum vulgare