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GrainGenes Marker Report: POPA1_0713

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Locus	POPA1_0713
Type	SNP
Synonym	Other name 12_10713 BOPA2_12_10713 Synonym 12_10713
Chromosome	7H
Chromosome Arm	7HL
Map	Barley, 2012 9KSNP 7H 70.7 Hordeum-OPA-2009-7H 79.6 Hordeum-OPA123-2008-7H 79.6 Hordeum-OPAConsensus-2011-7H 81.78
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Map Data	Barley, 2012 9KSNP Barley, OPA 2009, Consensus Barley, OPA 2011, Consensus Barley, OPA123-2008, Consensus
Species	Hordeum vulgare
Probe	HAR35_15408 i_12_10713
Reference	Comadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392. Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Data Source	Close, Timothy J.
Remark	[ Hide all but 1 of 12 ] Marker name in barley Pilot OPA1 = 1_0713 Marker name in barley OPA1 = 12_10713 Original SNP name = 486-1812 Most representative HarvEST:Barley Assembly #32 Unigene = 486 Most representative HarvEST:Barley Assembly #35 Unigene = 15408 HarvEST Unigene 35 Probe Set = Contig487_s_at; Contig742_at; HU08O12u_s_at Unigene 35 Rice Locus = LOC_Os08g09350 Description for best rice BLAST hit to Unigene 35 member = protein gar2, putative, expressed; E value = 0 Marker name in barley OPA2 = 12_10713 HarvEST Unigene 35 Probe Set = Contig487_s_at, Contig742_at, HU08O12u_s_at Description for best rice BLAST hit to Unigene 35 member = protein protein gar2, putative, expressed; E value = 0 BLAST hit in the rice genome = protein gar2, putative, expressed
Probe for Locus	HAR35_15408
Locus	POPA1_0713 POPA3_0835
Synonym	Synonym CDO689 MWG957
General Remarks	Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type	cDNA
Source Species	Hordeum vulgare