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GrainGenes Marker Report: POPA1_0714

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Locus	POPA1_0714
Type	SNP
Synonym	Other name 11_10714 BOPA1_11_10714 BOPA1_4879-1560 Synonym 11_10714
Chromosome	2H
Chromosome Arm	2HL
Map	Barley, 2012 9KSNP 2H 135.6 Hordeum-OPA-2009-2H 143.6 Hordeum-OPA123-2008-2H 143.6 Hordeum-OPAConsensus-2011-2H 159.11
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Map Data	Barley, 2012 9KSNP Barley, OPA 2009, Consensus Barley, OPA 2011, Consensus Barley, OPA123-2008, Consensus
Species	Hordeum vulgare
Probe	HAR35_17013 i_11_10714
Reference	Comadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392. Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Data Source	Close, Timothy J.
Remark	[ Hide all but 1 of 11 ] Marker name in barley Pilot OPA1 = 1_0714 Marker name in barley OPA1 = 11_10714 Original SNP name = 4879-1560 Most representative HarvEST:Barley Assembly #32 Unigene = 4879 Most representative HarvEST:Barley Assembly #35 Unigene = 17013 HarvEST Unigene 35 Probe Set = Contig6766_at; Contig6767_s_at Unigene 35 Rice Locus = LOC_Os04g57300 Description for best rice BLAST hit to Unigene 35 member = phosphatidylinositol 3- and 4-kinase family protein, expressed; E value = 0 HarvEST Unigene 35 Probe Set = Contig6766_at, Contig6767_s_at Description for best rice BLAST hit to Unigene 35 member = protein phosphatidylinositol 3- and 4-kinase family protein, expressed; E value = 0 BLAST hit in the rice genome = phosphatidylinositol 3- and 4-kinase family protein, expressed
Probe for Locus	HAR35_17013
Locus	POPA1_0714
General Remarks	Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type	cDNA
Source Species	Hordeum vulgare