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GrainGenes Marker Report: POPA1_0722

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Locus	POPA1_0722
Type	SNP
Synonym	Other name 11_10722 BOPA1_11_10722 BOPA1_4978-1030 Synonym 11_10722
Chromosome	1H
Chromosome Arm	1HL
Map	Barley, 2012 9KSNP 1H 118.6 Hordeum-OPA-2009-1H 125.27 Hordeum-OPA123-2008-1H 125.27 Hordeum-OPAConsensus-2011-1H 126.61
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Map Data	Barley, 2012 9KSNP Barley, OPA 2009, Consensus Barley, OPA 2011, Consensus Barley, OPA123-2008, Consensus
Species	Hordeum vulgare
Probe	HAR35_2770 i_11_10722
Reference	Comadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392. Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Data Source	Close, Timothy J.
Remark	[ Hide all but 1 of 10 ] Marker name in barley Pilot OPA1 = 1_0722 Marker name in barley OPA1 = 11_10722 Original SNP name = 4978-1030 Most representative HarvEST:Barley Assembly #32 Unigene = 4978 Most representative HarvEST:Barley Assembly #35 Unigene = 2770 HarvEST Unigene 35 Probe Set = Contig6782_at Unigene 35 Rice Locus = LOC_Os05g48900 Description for best rice BLAST hit to Unigene 35 member = fasciclin-like arabinogalactan protein 7 precursor, putative, expressed; E value = 2E-95 Description for best rice BLAST hit to Unigene 35 member = protein fasciclin-like arabinogalactan protein 7 precursor, putative, expressed; E value = 2E-95 BLAST hit in the rice genome = fasciclin-like arabinogalactan protein 7 precursor, putative, expressed
Probe for Locus	HAR35_2770
Locus	POPA1_0722
General Remarks	Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type	cDNA
Source Species	Hordeum vulgare