GrainGenes Marker Report: POPA1_0727
Locus
POPA1_0727
Type
SNP
Chromosome
3H
Chromosome Arm
3HS
Map
Barley-Core-2014_3H 2.89 Hordeum-OPA-2009-3H 0 Hordeum-OPA123-2008-3H 0 Hordeum-OPAConsensus-2011-3H 3.97
[ Show Nearby Loci ]
Map Data
Barley, OPA 2009, Consensus Barley, OPA 2011, Consensus Barley, OPA123-2008, Consensus Barley, USDA Core, 2014 Consensus
Probe
HAR35_17376
Reference
Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Data Source
Close, Timothy J.
Remark
[ Hide all but 1 of 8 ] Marker name in barley Pilot OPA1 = 1_0727 Most representative HarvEST:Barley Assembly #32 Unigene = 5029 Most representative HarvEST:Barley Assembly #35 Unigene = 17376 HarvEST Unigene 35 Probe Set = Contig6854_at Unigene 35 Rice Locus = LOC_Os01g01710 Original SNP name = 5029-1651 Description for best rice BLAST hit to Unigene 35 member = protein 1-deoxy-D-xylulose 5-phosphate reductoisomerase, chloroplast precursor, putative, expressed; E value = 0 BLAST hit in the rice genome = 1-deoxy-D-xylulose 5-phosphate reductoisomerase, chloroplast precursor, putative, expressed
Probe for Locus
HAR35_17376
Locus
POPA2_0858 POPA1_0727
General Remarks
Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type
cDNA
Source Species
Hordeum vulgare
GrainGenes Marker Report: POPA1_0727
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