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GrainGenes Marker Report: POPA1_0729

Locus	POPA1_0729
Type	SNP
Synonym	Synonym 11_10729
Chromosome	1H
Chromosome Arm	1HL
Map	Hordeum-OPA-2009-1H 116.31 Hordeum-OPA123-2008-1H 116.31 Hordeum-OPAConsensus-2011-1H 116.24
	[ Show Nearby Loci ]
Map Data	Barley, OPA 2009, Consensus Barley, OPA 2011, Consensus Barley, OPA123-2008, Consensus
Probe	HAR35_16847
Reference	Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Data Source	Close, Timothy J.
Remark	[ Hide all but 1 of 11 ] Marker name in barley Pilot OPA1 = 1_0729 Marker name in barley OPA1 = 11_10729 Original SNP name = 5048-1685 Most representative HarvEST:Barley Assembly #32 Unigene = 5048 Most representative HarvEST:Barley Assembly #35 Unigene = 16847 HarvEST Unigene 35 Probe Set = Contig6835_at; Contig6835_s_at Unigene 35 Rice Locus = LOC_Os08g16480 Description for best rice BLAST hit to Unigene 35 member = ATPase, putative, expressed; E value = 0 HarvEST Unigene 35 Probe Set = Contig6835_at, Contig6835_s_at Description for best rice BLAST hit to Unigene 35 member = protein ATPase, putative, expressed; E value = 0 BLAST hit in the rice genome = ATPase, putative, expressed
Probe for Locus	HAR35_16847
Locus	POPA1_0729
Synonym	Synonym BCD304
General Remarks	Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type	cDNA
Source Species	Hordeum vulgare