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GrainGenes Marker Report: POPA1_0752

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Locus	POPA1_0752
Type	SNP
Synonym	Other name 12_10752 BOPA2_12_10752 Synonym 12_10752
Chromosome	5H
Map	Hordeum-OPAConsensus-2011-5H 103.74
	[ Show Nearby Loci ]
Map Data	Barley, OPA 2009, Consensus Barley, OPA 2011, Consensus
Species	Hordeum vulgare
Probe	HAR35_17377 i_12_10752
Reference	Comadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392. Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Remark	[ Hide all but 1 of 9 ] Marker name in barley Pilot OPA1 = 1_0752 Marker name in barley OPA1 = 12_10752 Original SNP name = 5252-726 Most representative HarvEST:Barley Assembly #32 Unigene = 5252 Most representative HarvEST:Barley Assembly #35 Unigene = 17377 HarvEST Unigene 35 Probe Set = Contig7364_at Unigene 35 Rice Locus = LOC_Os09g36440 Description for best rice BLAST hit to Unigene 35 member = transcription initiation factor IIB, putative, expressed; E value = 1E-119 BLAST hit in the rice genome = transcription initiation factor IIB, putative, expressed
Probe for Locus	HAR35_17377
Locus	POPA1_0752