Query (optional)   in Class  

GrainGenes Marker Report: POPA1_0753

[Submit comment/correction]

Locus
POPA1_0753
Type
SNP
Synonym
Other name11_10753
BOPA1_11_10753
BOPA1_5253-1318
Synonym11_10753
Chromosome
3H
Chromosome Arm
3HL
Map
Barley, 2012 9KSNP 3H97.6
Hordeum-OPA-2009-3H114
Hordeum-OPA123-2008-3H114
Hordeum-OPAConsensus-2011-3H123.37
[ Show Nearby Loci ]
Map Data
Barley, 2012 9KSNP
Barley, OPA 2009, Consensus
Barley, OPA 2011, Consensus
Barley, OPA123-2008, Consensus
Species
Hordeum vulgare
Probe
HAR35_1930
i_11_10753
Reference
ReferenceComadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392.
ReferenceClose TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Data Source
Close, Timothy J.
Remark
[ Hide all but 1 of 10 ]
Marker name in barley Pilot OPA1 = 1_0753
Marker name in barley OPA1 = 11_10753
Original SNP name = 5253-1318
Most representative HarvEST:Barley Assembly #32 Unigene = 5253
Most representative HarvEST:Barley Assembly #35 Unigene = 1930
HarvEST Unigene 35 Probe Set = Contig7044_at
Unigene 35 Rice Locus = LOC_Os01g61970
Description for best rice BLAST hit to Unigene 35 member = protein GPR108 precursor, putative, expressed; E value = 0
Description for best rice BLAST hit to Unigene 35 member = protein protein GPR108 precursor, putative, expressed; E value = 0
BLAST hit in the rice genome = protein GPR108 precursor, putative, expressed


Probe for Locus
HAR35_1930
Locus
POPA1_0753
General Remarks
Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type
cDNA
Source Species
Hordeum vulgare