Query (optional)   in Class  All Allele Author Colleague Collection Assembly Gene Gene Class Gene Product Germplasm Image Journal Keyword Library Locus Map Map Data Marker Pathology Polymorphism Probe Protein QTL Rearrangement Reference Sequence Species Trait Trait Study Two Point Data  

---

GrainGenes Marker Report: POPA1_0758

[Submit comment/correction]

Locus	POPA1_0758
Type	SNP
Synonym	Other name 12_10758 BOPA2_12_10758 Synonym 12_10758
Chromosome	6H
Chromosome Arm	6HL
Map	Hordeum-OPA-2009-6H 60.23 Hordeum-OPA123-2008-6H 60.23 Hordeum-OPAConsensus-2011-6H 65.83
	[ Show Nearby Loci ]
Map Data	Barley, OPA 2009, Consensus Barley, OPA 2011, Consensus Barley, OPA123-2008, Consensus
Species	Hordeum vulgare
Probe	HAR35_17683 i_12_10758
Reference	Comadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392. Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Data Source	Close, Timothy J.
Remark	[ Hide all but 1 of 12 ] Marker name in barley Pilot OPA1 = 1_0758 Marker name in barley OPA1 = 12_10758 Original SNP name = 5324-813 Most representative HarvEST:Barley Assembly #32 Unigene = 5324 Most representative HarvEST:Barley Assembly #35 Unigene = 17683 HarvEST Unigene 35 Probe Set = Contig7399_s_at Unigene 35 Rice Locus = LOC_Os02g43760 Description for best rice BLAST hit to Unigene 35 member = ubiquitin carboxyl-terminal hydrolase isozyme L3, putative, expressed; E value = 1E-115 Marker name in barley OPA2 = 12_10758 Original SNP name = U32_7111_312 Description for best rice BLAST hit to Unigene 35 member = protein ubiquitin carboxyl-terminal hydrolase isozyme L3, putative, expressed; E value = 1E-115 BLAST hit in the rice genome = ubiquitin carboxyl-terminal hydrolase isozyme L3, putative, expressed
Probe for Locus	HAR35_17683
Locus	POPA1_0758
General Remarks	Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type	cDNA
Source Species	Hordeum vulgare