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GrainGenes Marker Report: POPA1_0770

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Locus	POPA1_0770
Type	SNP
Synonym	Other name 11_10770 BOPA1_11_10770 BOPA1_5419-760 Synonym 11_10770
Chromosome	2H
Chromosome Arm	2HL
Map	Hordeum-OPAConsensus-2011-2H 167.66
	[ Show Nearby Loci ]
Map Data	Barley, OPA 2009, Consensus Barley, OPA 2011, Consensus
Species	Hordeum vulgare
Probe	HAR35_2801 i_11_10770
Reference	Comadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392. Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Remark	[ Hide all but 1 of 9 ] Marker name in barley Pilot OPA1 = 1_0770 Marker name in barley OPA1 = 11_10770 Original SNP name = 5419-760 Most representative HarvEST:Barley Assembly #32 Unigene = 5419 Most representative HarvEST:Barley Assembly #35 Unigene = 2801 HarvEST Unigene 35 Probe Set = Contig7343_s_at Unigene 35 Rice Locus = LOC_Os04g58890 Description for best rice BLAST hit to Unigene 35 member = expressed protein; E value = 9E-39 BLAST hit in the rice genome = expressed protein
Probe for Locus	HAR35_2801
Locus	POPA1_0770
Synonym	Synonym BCD410
General Remarks	Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type	cDNA
Source Species	Hordeum vulgare