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GrainGenes Marker Report: POPA1_0774

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Locus	POPA1_0774
Type	SNP
Chromosome	6H
Chromosome Arm	6HS
Map	Hordeum-OPA-2009-6H 28.39 Hordeum-OPA123-2008-6H 28.39 Hordeum-OWB-OPA2008-6H 41.115
	[ Show Nearby Loci ]
Map Data	Barley, OPA 2009, Consensus Barley, OPA123-2008, Consensus Barley, OWB, OPA2008
Probe	HAR35_17450
Reference	Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582. Szucs P et al. (2009) An Integrated Resource for Barley Linkage Map and Malting Quality QTL Alignment The Plant Genome 2:134-140.
Data Source	Close, Timothy J.
Remark	[ Hide all but 1 of 9 ] Marker name in barley Pilot OPA1 = 1_0774 Most representative HarvEST:Barley Assembly #32 Unigene = 5481 Most representative HarvEST:Barley Assembly #35 Unigene = 17450 HarvEST Unigene 35 Probe Set = Contig7811_s_at Unigene 35 Rice Locus = LOC_Os01g73580 Description for best rice BLAST hit to Unigene 35 member = beta-fructofuranosidase, insoluble isoenzyme 4 precursor, putative, expressed; E value = 0 Original SNP name = 5481-1507 Description for best rice BLAST hit to Unigene 35 member = protein beta-fructofuranosidase, insoluble isoenzyme 4 precursor, putative, expressed; E value = 0 BLAST hit in the rice genome = beta-fructofuranosidase, insoluble isoenzyme 4 precursor, putative, expressed
Probe for Locus	HAR35_17450
Locus	POPA1_0774 POPA2_0941
General Remarks	Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type	cDNA
Source Species	Hordeum vulgare