Query (optional)   in Class  

GrainGenes Marker Report: POPA1_0782

[Submit comment/correction]

Locus
POPA1_0782
Type
SNP
Synonym
Other name11_10782
BOPA1_11_10782
BOPA1_5555-438
Synonym11_10782
Chromosome
1H
Chromosome Arm
1HL
Map
Hordeum-OPA-2009-1H131.89
Hordeum-OPA123-2008-1H131.89
Hordeum-OPAConsensus-2011-1H135.62
[ Show Nearby Loci ]
Map Data
Barley, OPA 2009, Consensus
Barley, OPA 2011, Consensus
Barley, OPA123-2008, Consensus
Species
Hordeum vulgare
Probe
HAR35_3369
i_11_10782
Reference
ReferenceComadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392.
ReferenceClose TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Data Source
Close, Timothy J.
Remark
[ Hide all but 1 of 11 ]
Marker name in barley Pilot OPA1 = 1_0782
Marker name in barley OPA1 = 11_10782
Original SNP name = 5555-438
Most representative HarvEST:Barley Assembly #32 Unigene = 5555
Most representative HarvEST:Barley Assembly #35 Unigene = 3369
HarvEST Unigene 35 Probe Set = Contig7556_s_at; HVSMEh0085O09r2_s_at
Unigene 35 Rice Locus = LOC_Os05g50220
Description for best rice BLAST hit to Unigene 35 member = peroxin Pex14, putative, expressed; E value = 1E-68
HarvEST Unigene 35 Probe Set = Contig7556_s_at, HVSMEh0085O09r2_s_at
Description for best rice BLAST hit to Unigene 35 member = protein peroxin Pex14, putative, expressed; E value = 1E-68
BLAST hit in the rice genome = peroxin Pex14, putative, expressed


Probe for Locus
HAR35_3369
Locus
POPA1_0782
General Remarks
Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type
cDNA
Source Species
Hordeum vulgare