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GrainGenes Marker Report: POPA1_0783

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Locus
POPA1_0783
Type
SNP
Synonym
Other name11_10783
BOPA1_11_10783
BOPA1_5571-640
Synonym11_10783
Chromosome
5H
Chromosome Arm
5HL
Map
Barley, 2012 9KSNP 5H125.6
Hordeum-OPA-2009-5H135.72
Hordeum-OPA123-2008-5H135.72
Hordeum-OPAConsensus-2011-5H130.32
[ Show Nearby Loci ]
Map Data
Barley, 2012 9KSNP
Barley, OPA 2009, Consensus
Barley, OPA 2011, Consensus
Barley, OPA123-2008, Consensus
Species
Hordeum vulgare
Probe
HAR35_17001
i_11_10783
Reference
ReferenceComadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392.
ReferenceClose TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Data Source
Close, Timothy J.
Remark
[ Hide all but 1 of 10 ]
Marker name in barley Pilot OPA1 = 1_0783
Marker name in barley OPA1 = 11_10783
Original SNP name = 5571-640
Most representative HarvEST:Barley Assembly #32 Unigene = 5571
Most representative HarvEST:Barley Assembly #35 Unigene = 17001
HarvEST Unigene 35 Probe Set = Contig7583_at
Unigene 35 Rice Locus = LOC_Os08g33190
Description for best rice BLAST hit to Unigene 35 member = linker histone H1 and H5 family protein, expressed; E value = 2E-62
Description for best rice BLAST hit to Unigene 35 member = protein linker histone H1 and H5 family protein, expressed; E value = 2E-62
BLAST hit in the rice genome = linker histone H1 and H5 family protein, expressed


Probe for Locus
HAR35_17001
Locus
POPA1_0783
General Remarks
Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type
cDNA
Source Species
Hordeum vulgare