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GrainGenes Marker Report: POPA1_0789

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Locus	POPA1_0789
Type	SNP
Synonym	Other name 11_10789 BOPA1_11_10789 BOPA1_5690-1045 Synonym 11_10789
Chromosome	1H
Chromosome Arm	1HL
Map	Hordeum-OPA-2009-1H 112.54 Hordeum-OPA123-2008-1H 112.54 Hordeum-OPAConsensus-2011-1H 114.06
	[ Show Nearby Loci ]
Map Data	Barley, OPA 2009, Consensus Barley, OPA 2011, Consensus Barley, OPA123-2008, Consensus
Species	Hordeum vulgare
Probe	HAR35_17365 i_11_10789
Reference	Comadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392. Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Data Source	Close, Timothy J.
Remark	[ Hide all but 1 of 11 ] Marker name in barley Pilot OPA1 = 1_0789 Marker name in barley OPA1 = 11_10789 Original SNP name = 5690-1045 Most representative HarvEST:Barley Assembly #32 Unigene = 5690 Most representative HarvEST:Barley Assembly #35 Unigene = 17365 HarvEST Unigene 35 Probe Set = Contig7744_at; HVSMEf0015M13r2_s_at Unigene 35 Rice Locus = LOC_Os05g45310 Description for best rice BLAST hit to Unigene 35 member = ER lumen protein retaining receptor, putative, expressed; E value = 1E-115 HarvEST Unigene 35 Probe Set = Contig7744_at, HVSMEf0015M13r2_s_at Description for best rice BLAST hit to Unigene 35 member = protein ER lumen protein retaining receptor, putative, expressed; E value = 1E-115 BLAST hit in the rice genome = ER lumen protein retaining receptor, putative, expressed
Probe for Locus	HAR35_17365
Locus	POPA1_0789
General Remarks	Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type	cDNA
Source Species	Hordeum vulgare