Query (optional)   in Class  All Allele Author Colleague Collection Assembly Gene Gene Class Gene Product Germplasm Image Journal Keyword Library Locus Map Map Data Marker Pathology Polymorphism Probe Protein QTL Rearrangement Reference Sequence Species Trait Trait Study Two Point Data  

---

GrainGenes Marker Report: POPA1_0799

[Submit comment/correction]

Locus	POPA1_0799
Type	SNP
Synonym	Other name 11_10799 BOPA1_11_10799 BOPA1_5771-91 Synonym 11_10799
Chromosome	6H
Chromosome Arm	6HS
Map	Barley, 2012 9KSNP 6H 33.2 Hordeum-OPA-2009-6H 31.73 Hordeum-OPA123-2008-6H 31.73 Hordeum-OPAConsensus-2011-6H 35.32 Hordeum-OWB-OPA2008-6H 47.686
	[ Show Nearby Loci ]
Map Data	Barley, 2012 9KSNP Barley, OPA 2009, Consensus Barley, OPA 2011, Consensus Barley, OPA123-2008, Consensus Barley, OWB, OPA2008
Species	Hordeum vulgare
Probe	HAR35_17404 i_11_10799
Reference	Comadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392. Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582. Szucs P et al. (2009) An Integrated Resource for Barley Linkage Map and Malting Quality QTL Alignment The Plant Genome 2:134-140.
Data Source	Close, Timothy J.
Remark	[ Hide all but 1 of 11 ] Marker name in barley Pilot OPA1 = 1_0799 Marker name in barley OPA1 = 11_10799 Original SNP name = 5771-91 Most representative HarvEST:Barley Assembly #32 Unigene = 5771 Most representative HarvEST:Barley Assembly #35 Unigene = 17404 HarvEST Unigene 35 Probe Set = Contig7800_at; HV_CEa0002D05f_s_at Unigene 35 Rice Locus = LOC_Os02g02830 Description for best rice BLAST hit to Unigene 35 member = ubiquitin-conjugating enzyme E2-17 kDa 9, putative, expressed; E value = 1E-81 HarvEST Unigene 35 Probe Set = Contig7800_at, HV_CEa0002D05f_s_at Description for best rice BLAST hit to Unigene 35 member = protein ubiquitin-conjugating enzyme E2-17 kDa 9, putative, expressed; E value = 1E-81 BLAST hit in the rice genome = ubiquitin-conjugating enzyme E2-17 kDa 9, putative, expressed
Probe for Locus	HAR35_17404
Locus	POPA1_0799
General Remarks	Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type	cDNA
Source Species	Hordeum vulgare