GrainGenes Marker Report: POPA1_0800
Locus
POPA1_0800
Type
SNP
Chromosome
7H
Chromosome Arm
7HS
Map
Barley-Core-2014_7H 38.31 Hordeum-OPA-2009-7H 34.82 Hordeum-OPA123-2008-7H 34.82 Hordeum-OPAConsensus-2011-7H 29.05
[ Show Nearby Loci ]
Map Data
Barley, OPA 2009, Consensus Barley, OPA 2011, Consensus Barley, OPA123-2008, Consensus Barley, USDA Core, 2014 Consensus
Probe
HAR35_3275
Reference
Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Data Source
Close, Timothy J.
Remark
[ Hide all but 1 of 9 ] Marker name in barley Pilot OPA1 = 1_0800 Most representative HarvEST:Barley Assembly #32 Unigene = 5777 Most representative HarvEST:Barley Assembly #35 Unigene = 3275 HarvEST Unigene 35 Probe Set = Contig7809_at Unigene 35 Rice Locus = LOC_Os02g04160 Description for best rice BLAST hit to Unigene 35 member = transcription elongation factor 1, putative, expressed; E value = 2E-40 Original SNP name = 5777-113 Description for best rice BLAST hit to Unigene 35 member = protein transcription elongation factor 1, putative, expressed; E value = 2E-40 BLAST hit in the rice genome = transcription elongation factor 1, putative, expressed
Probe for Locus
HAR35_3275
Locus
POPA2_0993 POPA1_0800
General Remarks
Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type
cDNA
Source Species
Hordeum vulgare
GrainGenes Marker Report: POPA1_0800
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