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GrainGenes Marker Report: POPA1_0813

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Locus	POPA1_0813
Type	SNP
Synonym	Other name 11_10813 BOPA1_11_10813 BOPA1_5960-1302 Synonym 11_10813
Chromosome	3H
Chromosome Arm	3HL
Map	Hordeum-OPAConsensus-2011-3H 83.58
	[ Show Nearby Loci ]
Map Data	Barley, OPA 2009, Consensus Barley, OPA 2011, Consensus
Species	Hordeum vulgare
Probe	HAR35_18053 i_11_10813
Reference	Comadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392. Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Remark	[ Hide all but 1 of 9 ] Marker name in barley Pilot OPA1 = 1_0813 Marker name in barley OPA1 = 11_10813 Original SNP name = 5960-1302 Most representative HarvEST:Barley Assembly #32 Unigene = 5960 Most representative HarvEST:Barley Assembly #35 Unigene = 18053 HarvEST Unigene 35 Probe Set = Contig8115_s_at; HV_CEb0024B09r2_s_at Unigene 35 Rice Locus = LOC_Os01g53880 Description for best rice BLAST hit to Unigene 35 member = OsIAA6 - Auxin-responsive Aux/IAA gene family member, expressed; E value = 1E-121 BLAST hit in the rice genome = OsIAA6 - Auxin-responsive Aux/IAA gene family member, expressed
Probe for Locus	HAR35_18053
Locus	POPA1_0813