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GrainGenes Marker Report: POPA1_0814

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Locus	POPA1_0814
Type	SNP
Synonym	Synonym 11_10814 bcd1340
Chromosome	1H
Chromosome Arm	1HS
Map	Hordeum-OPA-2009-1H 35.45 Hordeum-OPA123-2008-1H 35.45 Hordeum-OPAConsensus-2011-1H 28.99 Hordeum-OWB-OPA2008-1H 47.708
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Map Data	Barley, OPA 2009, Consensus Barley, OPA 2011, Consensus Barley, OPA123-2008, Consensus Barley, OWB, OPA2008
Probe	HAR35_455
Reference	Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582. Szucs P et al. (2009) An Integrated Resource for Barley Linkage Map and Malting Quality QTL Alignment The Plant Genome 2:134-140.
Data Source	Close, Timothy J.
Remark	[ Hide all but 1 of 10 ] Marker name in barley Pilot OPA1 = 1_0814 Marker name in barley OPA1 = 11_10814 Original SNP name = 596-1035 Most representative HarvEST:Barley Assembly #32 Unigene = 596 Most representative HarvEST:Barley Assembly #35 Unigene = 455 HarvEST Unigene 35 Probe Set = Contig306_s_at Unigene 35 Rice Locus = LOC_Os05g02780 Description for best rice BLAST hit to Unigene 35 member = glycine-rich protein A3, putative, expressed; E value = 1E-67 Description for best rice BLAST hit to Unigene 35 member = protein glycine-rich protein A3, putative, expressed; E value = 1E-67 BLAST hit in the rice genome = glycine-rich protein A3, putative, expressed
Probe for Locus	HAR35_455
Locus	POPA1_0814
Synonym	Synonym BCD1340
General Remarks	Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type	cDNA
Source Species	Hordeum vulgare