Query (optional)   in Class  

GrainGenes Marker Report: POPA1_0821

[Submit comment/correction]

Locus
POPA1_0821
Type
SNP
Synonym
Other name11_10821
BOPA1_11_10821
BOPA1_6069-304
Synonym11_10821
Chromosome
3H
Chromosome Arm
3HL
Map
Hordeum-OPA-2009-3H126.27
Hordeum-OPA123-2008-3H126.27
Hordeum-OPAConsensus-2011-3H134.71
Hordeum-OWB-OPA2008-3H149.378
[ Show Nearby Loci ]
Map Data
Barley, OPA 2009, Consensus
Barley, OPA 2011, Consensus
Barley, OPA123-2008, Consensus
Barley, OWB, OPA2008
Species
Hordeum vulgare
Probe
HAR35_17444
i_11_10821
Reference
ReferenceComadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392.
ReferenceClose TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
ReferenceSzucs P et al. (2009) An Integrated Resource for Barley Linkage Map and Malting Quality QTL Alignment The Plant Genome 2:134-140.
Data Source
Close, Timothy J.
Remark
[ Hide all but 1 of 10 ]
Marker name in barley Pilot OPA1 = 1_0821
Marker name in barley OPA1 = 11_10821
Original SNP name = 6069-304
Most representative HarvEST:Barley Assembly #32 Unigene = 6069
Most representative HarvEST:Barley Assembly #35 Unigene = 17444
HarvEST Unigene 35 Probe Set = Contig8138_s_at
Unigene 35 Rice Locus = LOC_Os01g66240
Description for best rice BLAST hit to Unigene 35 member = catalytic/ hydrolase, putative, expressed; E value = 1E-102
Description for best rice BLAST hit to Unigene 35 member = protein catalytic/ hydrolase, putative, expressed; E value = 1E-102
BLAST hit in the rice genome = catalytic/ hydrolase, putative, expressed


Probe for Locus
HAR35_17444
Locus
POPA1_0821
General Remarks
Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type
cDNA
Source Species
Hordeum vulgare