GrainGenes Marker Report: POPA1_0822
Locus
POPA1_0822
Type
SNP
Chromosome
1H
Chromosome Arm
1HL
Map
Barley-Core-2014_1H 96.25 Hordeum-OPA-2009-1H 97.68 Hordeum-OPA123-2008-1H 97.68 Hordeum-OPAConsensus-2011-1H 100.4
[ Show Nearby Loci ]
Map Data
Barley, OPA 2009, Consensus Barley, OPA 2011, Consensus Barley, OPA123-2008, Consensus Barley, USDA Core, 2014 Consensus
Probe
HAR35_18019
Reference
Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Data Source
Close, Timothy J.
Remark
[ Hide all but 1 of 10 ] Marker name in barley Pilot OPA1 = 1_0822 Most representative HarvEST:Barley Assembly #32 Unigene = 6105 Most representative HarvEST:Barley Assembly #35 Unigene = 18019 HarvEST Unigene 35 Probe Set = Contig8305_at Unigene 35 Rice Locus = LOC_Os05g44340 Description for best rice BLAST hit to Unigene 35 member = heat shock protein 101, putative, expressed; E value = 0 Original SNP name = 6105-1288 Original SNP name = U35_21782_494 Description for best rice BLAST hit to Unigene 35 member = protein heat shock protein 101, putative, expressed; E value = 0 BLAST hit in the rice genome = heat shock protein 101, putative, expressed
Probe for Locus
HAR35_18019
Locus
POPA1_0822
General Remarks
Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type
cDNA
Source Species
Hordeum vulgare
GrainGenes Marker Report: POPA1_0822
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