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GrainGenes Marker Report: POPA1_0827

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Locus	POPA1_0827
Type	SNP
Chromosome	3H
Chromosome Arm	3HL
Map	Hordeum-OPA-2009-3H 144.64 Hordeum-OPA123-2008-3H 144.64
	[ Show Nearby Loci ]
Map Data	Barley, OPA 2009, Consensus Barley, OPA123-2008, Consensus
Probe	HAR35_1633
Reference	Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Data Source	Close, Timothy J.
Remark	[ Hide all but 1 of 10 ] Marker name in barley Pilot OPA1 = 1_0827 Most representative HarvEST:Barley Assembly #32 Unigene = 6164 Most representative HarvEST:Barley Assembly #35 Unigene = 1633 HarvEST Unigene 35 Probe Set = Contig8424_at; Contig8424_s_at; Contig8425_at Unigene 35 Rice Locus = LOC_Os06g51480 Description for best rice BLAST hit to Unigene 35 member = expressed protein; E value = 2E-90 Original SNP name = 6164-774 HarvEST Unigene 35 Probe Set = Contig8424_at, Contig8424_s_at, Contig8425_at Description for best rice BLAST hit to Unigene 35 member = protein expressed protein; E value = 2E-90 BLAST hit in the rice genome = expressed protein
Probe for Locus	HAR35_1633
Locus	POPA1_0827 POPA2_1060
General Remarks	Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type	cDNA
Source Species	Hordeum vulgare