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GrainGenes Marker Report: POPA1_0828

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Locus	POPA1_0828
Type	SNP
Synonym	Other name 11_10828 BOPA1_11_10828 BOPA1_617-167 Synonym 11_10828
Chromosome	6H
Chromosome Arm	6HL
Map	Barley, 2012 9KSNP 6H 118 Hordeum-OPA-2009-6H 124.85 Hordeum-OPA123-2008-6H 124.85 Hordeum-OPAConsensus-2011-6H 137.41
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Map Data	Barley, 2012 9KSNP Barley, OPA 2009, Consensus Barley, OPA 2011, Consensus Barley, OPA123-2008, Consensus
Species	Hordeum vulgare
Probe	HAR35_492 i_11_10828
Reference	Comadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392. Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Data Source	Close, Timothy J.
Remark	[ Hide all but 1 of 11 ] Marker name in barley Pilot OPA1 = 1_0828 Marker name in barley OPA1 = 11_10828 Original SNP name = 617-167 Most representative HarvEST:Barley Assembly #32 Unigene = 617 Most representative HarvEST:Barley Assembly #35 Unigene = 492 HarvEST Unigene 35 Probe Set = baak16l04_x_at Unigene 35 Rice Locus = LOC_Os01g52240 Description for best rice BLAST hit to Unigene 35 member = chlorophyll a-b binding protein 2, chloroplast precursor, putative, expressed; E value = 1E-139 Original SNP name = U32_209_201 Description for best rice BLAST hit to Unigene 35 member = protein chlorophyll a-b binding protein 2, chloroplast precursor, putative, expressed; E value = 1E-139 BLAST hit in the rice genome = chlorophyll a-b binding protein 2, chloroplast precursor, putative, expressed
Probe for Locus	HAR35_492
Locus	POPA1_0828 POPA2_1063
General Remarks	Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type	cDNA
Source Species	Hordeum vulgare