Query (optional)   in Class  All Allele Author Colleague Collection Assembly Gene Gene Class Gene Product Germplasm Image Journal Keyword Library Locus Map Map Data Marker Pathology Polymorphism Probe Protein QTL Rearrangement Reference Sequence Species Trait Trait Study Two Point Data  

---

GrainGenes Marker Report: POPA1_0831

[Submit comment/correction]

Locus	POPA1_0831
Type	SNP
Chromosome	2H
Chromosome Arm	2HL
Map	Barley-Core-2014_2H 77.34 Hordeum-OPA-2009-2H 73.75 Hordeum-OPA123-2008-2H 73.75 Hordeum-OPAConsensus-2011-2H 84.96
	[ Show Nearby Loci ]
Map Data	Barley, OPA 2009, Consensus Barley, OPA 2011, Consensus Barley, OPA123-2008, Consensus Barley, USDA Core, 2014 Consensus
Probe	HAR35_15746
Reference	Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Data Source	Close, Timothy J.
Remark	[ Hide all but 1 of 10 ] Marker name in barley Pilot OPA1 = 1_0831 Most representative HarvEST:Barley Assembly #32 Unigene = 6293 Most representative HarvEST:Barley Assembly #35 Unigene = 15746 HarvEST Unigene 35 Probe Set = Contig8240_at; Contig8240_s_at; Contig8241_at Unigene 35 Rice Locus = LOC_Os04g42140 Description for best rice BLAST hit to Unigene 35 member = eukaryotic initiation factor iso-4F subunit p82-34, putative, expressed; E value = 1E-118 Original SNP name = 6293-1670 HarvEST Unigene 35 Probe Set = Contig8240_at, Contig8240_s_at, Contig8241_at Description for best rice BLAST hit to Unigene 35 member = protein eukaryotic initiation factor iso-4F subunit p82-34, putative, expressed; E value = 1E-118 BLAST hit in the rice genome = eukaryotic initiation factor iso-4F subunit p82-34, putative, expressed
Probe for Locus	HAR35_15746
Locus	POPA1_0831 POPA2_1080
General Remarks	Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type	cDNA
Source Species	Hordeum vulgare