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GrainGenes Marker Report: POPA1_0841

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Locus	POPA1_0841
Type	SNP
Synonym	Other name 11_10841 BOPA1_11_10841 BOPA1_6394-944 Synonym 11_10841
Chromosome	7H
Chromosome Arm	7HS
Map	Barley, 2012 9KSNP 7H 12.7 Hordeum-OPA-2009-7H 14.96 Hordeum-OPA123-2008-7H 14.96 Hordeum-OPAConsensus-2011-7H 9.73
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Map Data	Barley, 2012 9KSNP Barley, OPA 2009, Consensus Barley, OPA 2011, Consensus Barley, OPA123-2008, Consensus
Species	Hordeum vulgare
Probe	HAR35_3726 i_11_10841
Reference	Comadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392. Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Data Source	Close, Timothy J.
Remark	[ Hide all but 1 of 12 ] Marker name in barley Pilot OPA1 = 1_0841 Marker name in barley OPA1 = 11_10841 Original SNP name = 6394-944 Most representative HarvEST:Barley Assembly #32 Unigene = 6394 Most representative HarvEST:Barley Assembly #35 Unigene = 3726 HarvEST Unigene 35 Probe Set = Contig8413_at; Contig8413_s_at Unigene 35 Rice Locus = LOC_Os06g03690 Description for best rice BLAST hit to Unigene 35 member = nucleic acid binding protein, putative, expressed; E value = 1E-105 Original SNP name = U35_20056_364 HarvEST Unigene 35 Probe Set = Contig8413_at, Contig8413_s_at Description for best rice BLAST hit to Unigene 35 member = protein nucleic acid binding protein, putative, expressed; E value = 1E-105 BLAST hit in the rice genome = nucleic acid binding protein, putative, expressed
Probe for Locus	HAR35_3726
Locus	POPA1_0841
General Remarks	Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type	cDNA
Source Species	Hordeum vulgare