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GrainGenes Marker Report: POPA1_0842

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Locus	POPA1_0842
Type	SNP
Synonym	Other name 11_10842 BOPA1_11_10842 BOPA1_6402-691 Synonym 11_10842
Chromosome	3H
Chromosome Arm	3HL
Map	Hordeum-OPA-2009-3H 131.59 Hordeum-OPA123-2008-3H 131.59 Hordeum-OPAConsensus-2011-3H 139 Hordeum-OWB-OPA2008-3H 155.924
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Map Data	Barley, OPA 2009, Consensus Barley, OPA 2011, Consensus Barley, OPA123-2008, Consensus Barley, OWB, OPA2008
Species	Hordeum vulgare
Probe	HAR35_3358 i_11_10842
Reference	Comadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392. Szucs P et al. (2009) An Integrated Resource for Barley Linkage Map and Malting Quality QTL Alignment The Plant Genome 2:134-140. Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Data Source	Close, Timothy J.
Remark	[ Hide all but 1 of 10 ] Marker name in barley Pilot OPA1 = 1_0842 Marker name in barley OPA1 = 11_10842 Original SNP name = 6402-691 Most representative HarvEST:Barley Assembly #32 Unigene = 6402 Most representative HarvEST:Barley Assembly #35 Unigene = 3358 HarvEST Unigene 35 Probe Set = Contig8548_at Unigene 35 Rice Locus = LOC_Os01g68710 Description for best rice BLAST hit to Unigene 35 member = FK506-binding protein 2-1 precursor, putative, expressed; E value = 2E-71 Description for best rice BLAST hit to Unigene 35 member = protein FK506-binding protein 2-1 precursor, putative, expressed; E value = 2E-71 BLAST hit in the rice genome = FK506-binding protein 2-1 precursor, putative, expressed
Probe for Locus	HAR35_3358
Locus	POPA1_0842
General Remarks	Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type	cDNA
Source Species	Hordeum vulgare