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GrainGenes Marker Report: POPA1_0852

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Locus	POPA1_0852
Type	SNP
Chromosome	3H
Chromosome Arm	3HS
Map	Barley-Core-2014_3H 44.82 Hordeum-OPA-2009-3H 37.17 Hordeum-OPA123-2008-3H 37.17 Hordeum-OPAConsensus-2011-3H 37.62
	[ Show Nearby Loci ]
Map Data	Barley, OPA 2009, Consensus Barley, OPA 2011, Consensus Barley, OPA123-2008, Consensus Barley, USDA Core, 2014 Consensus
Probe	HAR35_18250
Reference	Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Data Source	Close, Timothy J.
Remark	[ Hide all but 1 of 10 ] Marker name in barley Pilot OPA1 = 1_0852 Most representative HarvEST:Barley Assembly #32 Unigene = 6530 Most representative HarvEST:Barley Assembly #35 Unigene = 18250 HarvEST Unigene 35 Probe Set = Contig16997_at; Contig8623_s_at; rbaal1b14_s_at Unigene 35 Rice Locus = LOC_Os01g73910 Description for best rice BLAST hit to Unigene 35 member = peptidase M48, Ste24p, putative, expressed; E value = 1E-139 Original SNP name = 6530-670 HarvEST Unigene 35 Probe Set = Contig16997_at, Contig8623_s_at, rbaal1b14_s_at Description for best rice BLAST hit to Unigene 35 member = protein peptidase M48, Ste24p, putative, expressed; E value = 1E-139 BLAST hit in the rice genome = peptidase M48, Ste24p, putative, expressed
Probe for Locus	HAR35_18250
Locus	POPA1_0852
General Remarks	Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type	cDNA
Source Species	Hordeum vulgare