Query (optional)   in Class  

GrainGenes Marker Report: POPA1_0853

[Submit comment/correction]

Locus
POPA1_0853
Type
SNP
Synonym
Other name11_10853
BOPA1_11_10853
BOPA1_6541-1329
Synonym11_10853
Chromosome
7H
Chromosome Arm
7HL
Map
Hordeum-OPA-2009-7H110.99
Hordeum-OPA123-2008-7H110.99
Hordeum-OPAConsensus-2011-7H111.15
[ Show Nearby Loci ]
Map Data
Barley, OPA 2009, Consensus
Barley, OPA 2011, Consensus
Barley, OPA123-2008, Consensus
Species
Hordeum vulgare
Probe
HAR35_3538
i_11_10853
Reference
ReferenceComadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392.
ReferenceClose TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Data Source
Close, Timothy J.
Remark
[ Hide all but 1 of 11 ]
Marker name in barley Pilot OPA1 = 1_0853
Marker name in barley OPA1 = 11_10853
Original SNP name = 6541-1329
Most representative HarvEST:Barley Assembly #32 Unigene = 6541
Most representative HarvEST:Barley Assembly #35 Unigene = 3538
HarvEST Unigene 35 Probe Set = Contig8554_at; HVSMEk0004G03f_s_at
Unigene 35 Rice Locus = LOC_Os07g14830
Description for best rice BLAST hit to Unigene 35 member = WD-repeat protein 39, putative, expressed; E value = 0
HarvEST Unigene 35 Probe Set = Contig8554_at, HVSMEk0004G03f_s_at
Description for best rice BLAST hit to Unigene 35 member = protein WD-repeat protein 39, putative, expressed; E value = 0
BLAST hit in the rice genome = WD-repeat protein 39, putative, expressed


Probe for Locus
HAR35_3538
Locus
POPA1_0853
General Remarks
Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type
cDNA
Source Species
Hordeum vulgare