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GrainGenes Marker Report: POPA1_0865

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Locus	POPA1_0865
Type	SNP
Chromosome	1H
Chromosome Arm	1HL
Map	Barley-Core-2014_1H 90.98 Hordeum-OPA-2009-1H 96.92 Hordeum-OPA123-2008-1H 96.92 Hordeum-OPAConsensus-2011-1H 96.95
	[ Show Nearby Loci ]
Map Data	Barley, OPA 2009, Consensus Barley, OPA 2011, Consensus Barley, OPA123-2008, Consensus Barley, USDA Core, 2014 Consensus
Probe	HAR35_18228
Reference	Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Data Source	Close, Timothy J.
Remark	[ Hide all but 1 of 10 ] Marker name in barley Pilot OPA1 = 1_0865 Most representative HarvEST:Barley Assembly #32 Unigene = 6678 Most representative HarvEST:Barley Assembly #35 Unigene = 18228 HarvEST Unigene 35 Probe Set = Contig9006_at; HV10A20u_s_at Unigene 35 Rice Locus = LOC_Os05g43230 Description for best rice BLAST hit to Unigene 35 member = cysteine proteinase RD21a precursor, putative, expressed; E value = 0 Original SNP name = 6678-1060 HarvEST Unigene 35 Probe Set = Contig9006_at, HV10A20u_s_at Description for best rice BLAST hit to Unigene 35 member = protein cysteine proteinase RD21a precursor, putative, expressed; E value = 0 BLAST hit in the rice genome = cysteine proteinase RD21a precursor, putative, expressed
Probe for Locus	HAR35_18228
Locus	POPA1_0865
General Remarks	Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type	cDNA
Source Species	Hordeum vulgare