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GrainGenes Marker Report: POPA1_0868

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Locus
POPA1_0868
Type
SNP
Synonym
Other name11_10868
BOPA1_11_10868
BOPA1_6719-1166
Synonym11_10868
Chromosome
6H
Chromosome Arm
6HS
Map
Hordeum-OPA-2009-6H24.36
Hordeum-OPA123-2008-6H24.36
Hordeum-OPAConsensus-2011-6H27.33
[ Show Nearby Loci ]
Map Data
Barley, OPA 2009, Consensus
Barley, OPA 2011, Consensus
Barley, OPA123-2008, Consensus
Species
Hordeum vulgare
Probe
HAR35_18248
i_11_10868
Reference
ReferenceComadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392.
ReferenceClose TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Data Source
Close, Timothy J.
Remark
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Marker name in barley Pilot OPA1 = 1_0868
Marker name in barley OPA1 = 11_10868
Original SNP name = 6719-1166
Most representative HarvEST:Barley Assembly #32 Unigene = 6719
Most representative HarvEST:Barley Assembly #35 Unigene = 18248
HarvEST Unigene 35 Probe Set = Contig8885_s_at; Contig8886_at
Unigene 35 Rice Locus = LOC_Os08g23730
Description for best rice BLAST hit to Unigene 35 member = GMP synthase, putative, expressed; E value = 0
HarvEST Unigene 35 Probe Set = Contig8885_s_at, Contig8886_at
Description for best rice BLAST hit to Unigene 35 member = protein GMP synthase, putative, expressed; E value = 0
BLAST hit in the rice genome = GMP synthase, putative, expressed


Probe for Locus
HAR35_18248
Locus
POPA1_0868
General Remarks
Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type
cDNA
Source Species
Hordeum vulgare