GrainGenes Marker Report: POPA1_0872
Locus
POPA1_0872
Type
SNP
Map Data
Barley, OPA 2009, Consensus
Probe
HAR35_13742
Reference
Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Remark
[ Hide all but 1 of 7 ] Marker name in barley Pilot OPA1 = 1_0872 Most representative HarvEST:Barley Assembly #32 Unigene = 677 Most representative HarvEST:Barley Assembly #35 Unigene = 13742 HarvEST Unigene 35 Probe Set = Contig1041_x_at; Contig1079_x_at Unigene 35 Rice Locus = LOC_Os01g22490 Description for best rice BLAST hit to Unigene 35 member = 40S ribosomal protein S27a, putative, expressed; E value = 9E-86 BLAST hit in the rice genome = 40S ribosomal protein S27a, putative, expressed
Probe for Locus
HAR35_13742
Locus
POPA2_1140 POPA1_0872
General Remarks
Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type
cDNA
Source Species
Hordeum vulgare
GrainGenes Marker Report: POPA1_0872
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