Query (optional)   in Class  All Allele Author Colleague Collection Assembly Gene Gene Class Gene Product Germplasm Image Journal Keyword Library Locus Map Map Data Marker Pathology Polymorphism Probe Protein QTL Rearrangement Reference Sequence Species Trait Trait Study Two Point Data  

---

GrainGenes Marker Report: POPA1_0878

[Submit comment/correction]

Locus	POPA1_0878
Type	SNP
Synonym	Other name 12_10878 BOPA2_12_10878 Synonym 12_10878
Map Data	Barley, OPA 2009, Consensus
Species	Hordeum vulgare
Probe	HAR35_18539 i_12_10878
Reference	Comadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392. Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Remark	[ Hide all but 1 of 9 ] Marker name in barley Pilot OPA1 = 1_0878 Marker name in barley OPA1 = 12_10878 Original SNP name = 6910-393 Most representative HarvEST:Barley Assembly #32 Unigene = 6910 Most representative HarvEST:Barley Assembly #35 Unigene = 18539 HarvEST Unigene 35 Probe Set = Contig9064_at Unigene 35 Rice Locus = LOC_Os06g05650 Description for best rice BLAST hit to Unigene 35 member = expressed protein; E value = 5E-21 BLAST hit in the rice genome = expressed protein
Probe for Locus	HAR35_18539
Locus	POPA1_0878