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GrainGenes Marker Report: POPA1_0880

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Locus	POPA1_0880
Type	SNP
Synonym	Other name 12_10880 BOPA2_12_10880 Synonym 12_10880
Map Data	Barley, OPA 2009, Consensus
Species	Hordeum vulgare
Probe	HAR35_18667 i_12_10880
Reference	Comadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392. Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Remark	[ Hide all but 1 of 9 ] Marker name in barley Pilot OPA1 = 1_0880 Marker name in barley OPA1 = 12_10880 Original SNP name = 6928-788 Most representative HarvEST:Barley Assembly #32 Unigene = 6928 Most representative HarvEST:Barley Assembly #35 Unigene = 18667 HarvEST Unigene 35 Probe Set = Contig9168_s_at; Contig9169_at Unigene 35 Rice Locus = LOC_Os07g49310 Description for best rice BLAST hit to Unigene 35 member = omega-3 fatty acid desaturase, chloroplast precursor, putative, expressed; E value = 1E-127 BLAST hit in the rice genome = omega-3 fatty acid desaturase, chloroplast precursor, putative, expressed
Probe for Locus	HAR35_18667
Locus	POPA1_0880