Query (optional)   in Class  All Allele Author Colleague Collection Assembly Gene Gene Class Gene Product Germplasm Image Journal Keyword Library Locus Map Map Data Marker Pathology Polymorphism Probe Protein QTL Rearrangement Reference Sequence Species Trait Trait Study Two Point Data  

---

GrainGenes Marker Report: POPA1_0896

[Submit comment/correction]

Locus	POPA1_0896
Type	SNP
Synonym	Other name 11_10896 BOPA1_11_10896 BOPA1_7180-778 Synonym 11_10896
Chromosome	7H
Chromosome Arm	7HL
Map	Barley, 2012 9KSNP 7H 131.9 Hordeum-OPA-2009-7H 148.25 Hordeum-OPA123-2008-7H 148.25 Hordeum-OPAConsensus-2011-7H 150.44 Hordeum-OWB-OPA2008-7H 169.345
	[ Show Nearby Loci ]
Map Data	Barley, 2012 9KSNP Barley, OPA 2009, Consensus Barley, OPA 2011, Consensus Barley, OPA123-2008, Consensus Barley, OWB, OPA2008
Species	Hordeum vulgare
Probe	HAR35_3925 i_11_10896
Reference	Comadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392. Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582. Szucs P et al. (2009) An Integrated Resource for Barley Linkage Map and Malting Quality QTL Alignment The Plant Genome 2:134-140.
Data Source	Close, Timothy J.
Remark	[ Hide all but 1 of 11 ] Marker name in barley Pilot OPA1 = 1_0896 Marker name in barley OPA1 = 11_10896 Original SNP name = 7180-778 Most representative HarvEST:Barley Assembly #32 Unigene = 7180 Most representative HarvEST:Barley Assembly #35 Unigene = 3925 HarvEST Unigene 35 Probe Set = Contig9737_at; Contig9737_s_at; Contig9738_at Unigene 35 Rice Locus = LOC_Os06g50330 Description for best rice BLAST hit to Unigene 35 member = senescence-associated protein 12, putative, expressed; E value = 1E-87 HarvEST Unigene 35 Probe Set = Contig9737_at, Contig9737_s_at, Contig9738_at Description for best rice BLAST hit to Unigene 35 member = protein senescence-associated protein 12, putative, expressed; E value = 1E-87 BLAST hit in the rice genome = senescence-associated protein 12, putative, expressed
Probe for Locus	HAR35_3925
Locus	POPA1_0896
General Remarks	Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type	cDNA
Source Species	Hordeum vulgare