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GrainGenes Marker Report: POPA1_0897

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Locus
POPA1_0897
Type
SNP
Synonym
Other name12_10897
BOPA2_12_10897
Synonym12_10897
Map Data
Barley, OPA 2009, Consensus
Species
Hordeum vulgare
Probe
HAR35_18038
i_12_10897
Reference
ReferenceComadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392.
ReferenceClose TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Remark
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Marker name in barley Pilot OPA1 = 1_0897
Marker name in barley OPA1 = 12_10897
Original SNP name = 7206-2010
Most representative HarvEST:Barley Assembly #32 Unigene = 7206
Most representative HarvEST:Barley Assembly #35 Unigene = 18038
HarvEST Unigene 35 Probe Set = Contig9776_at
Unigene 35 Rice Locus = LOC_Os06g47350
BLAST hit in the rice genome = RNA polymerase I transcription factor, putative, expressed



Probe for Locus
HAR35_18038
Locus
POPA1_0897