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GrainGenes Marker Report: POPA1_0901

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Locus	POPA1_0901
Type	SNP
Synonym	Other name 11_10901 BOPA1_11_10901 BOPA1_7337-388 Synonym 11_10901
Chromosome	5H
Chromosome Arm	5HL
Map	Barley, 2012 9KSNP 5H 143.3 Hordeum-OPA-2009-5H 158.37 Hordeum-OPA123-2008-5H 158.37 Hordeum-OPAConsensus-2011-5H 152.93 Hordeum-OWB-OPA2008-5H 192.868
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Map Data	Barley, 2012 9KSNP Barley, OPA 2009, Consensus Barley, OPA 2011, Consensus Barley, OPA123-2008, Consensus Barley, OWB, OPA2008
Species	Hordeum vulgare
Probe	HAR35_16846 i_11_10901
Reference	Comadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392. Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582. Szucs P et al. (2009) An Integrated Resource for Barley Linkage Map and Malting Quality QTL Alignment The Plant Genome 2:134-140.
Data Source	Close, Timothy J.
Remark	[ Hide all but 1 of 10 ] Marker name in barley Pilot OPA1 = 1_0901 Marker name in barley OPA1 = 11_10901 Original SNP name = 7337-388 Most representative HarvEST:Barley Assembly #32 Unigene = 7337 Most representative HarvEST:Barley Assembly #35 Unigene = 16846 HarvEST Unigene 35 Probe Set = Contig9728_at Unigene 35 Rice Locus = LOC_Os03g58940 Description for best rice BLAST hit to Unigene 35 member = lipid binding protein, putative; E value = 1E-52 Description for best rice BLAST hit to Unigene 35 member = protein lipid binding protein, putative; E value = 1E-52 BLAST hit in the rice genome = lipid binding protein, putative
Probe for Locus	HAR35_16846
Locus	POPA1_0901
General Remarks	Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type	cDNA
Source Species	Hordeum vulgare