GrainGenes Marker Report: POPA1_0908
Locus
POPA1_0908
Type
SNP
Chromosome
3H
Map
Barley-Core-2014_3H 15.2 Hordeum-OPAConsensus-2011-3H 14.91
[ Show Nearby Loci ]
Map Data
Barley, OPA 2009, Consensus Barley, OPA 2011, Consensus Barley, USDA Core, 2014 Consensus
Probe
HAR35_18775
Reference
Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Remark
[ Hide all but 1 of 7 ] Marker name in barley Pilot OPA1 = 1_0908 Most representative HarvEST:Barley Assembly #32 Unigene = 7458 Most representative HarvEST:Barley Assembly #35 Unigene = 18775 HarvEST Unigene 35 Probe Set = Contig9797_at; HVSMEf0015P21r2_s_at Unigene 35 Rice Locus = LOC_Os01g03549 Description for best rice BLAST hit to Unigene 35 member = copper ion binding protein, putative, expressed; E value = 0 BLAST hit in the rice genome = copper ion binding protein, putative, expressed
Probe for Locus
HAR35_18775
Locus
POPA1_0908 POPA2_1515
General Remarks
Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type
cDNA
Source Species
Hordeum vulgare
GrainGenes Marker Report: POPA1_0908
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