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GrainGenes Marker Report: POPA1_0914

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Locus	POPA1_0914
Type	SNP
Synonym	Other name 11_10914 BOPA1_11_10914 BOPA1_7560-538 Synonym 11_10914
Chromosome	4H
Chromosome Arm	4HL
Map	Hordeum-OPAConsensus-2011-4H 65.28
	[ Show Nearby Loci ]
Map Data	Barley, OPA 2009, Consensus Barley, OPA 2011, Consensus
Species	Hordeum vulgare
Probe	HAR35_2677 i_11_10914
Reference	Comadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392. Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Remark	[ Hide all but 1 of 9 ] Marker name in barley Pilot OPA1 = 1_0914 Marker name in barley OPA1 = 11_10914 Original SNP name = 7560-538 Most representative HarvEST:Barley Assembly #32 Unigene = 7560 Most representative HarvEST:Barley Assembly #35 Unigene = 2677 HarvEST Unigene 35 Probe Set = Contig9938_at Unigene 35 Rice Locus = LOC_Os03g15870 Description for best rice BLAST hit to Unigene 35 member = 50S ribosomal protein L4, chloroplast precursor, putative, expressed; E value = 1E-134 BLAST hit in the rice genome = 50S ribosomal protein L4, chloroplast precursor, putative, expressed
Probe for Locus	HAR35_2677
Locus	POPA1_0914