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GrainGenes Marker Report: POPA1_0915

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Locus	POPA1_0915
Type	SNP
Synonym	Other name 12_10915 BOPA2_12_10915 Synonym 12_10915
Chromosome	2H
Map	Hordeum-OPAConsensus-2011-2H 154.59
	[ Show Nearby Loci ]
Map Data	Barley, OPA 2009, Consensus Barley, OPA 2011, Consensus
Species	Hordeum vulgare
Probe	HAR35_18998 i_12_10915
Reference	Comadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392. Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Remark	[ Hide all but 1 of 9 ] Marker name in barley Pilot OPA1 = 1_0915 Marker name in barley OPA1 = 12_10915 Original SNP name = 7574-495 Most representative HarvEST:Barley Assembly #32 Unigene = 7574 Most representative HarvEST:Barley Assembly #35 Unigene = 18998 HarvEST Unigene 35 Probe Set = Contig10204_s_at; Contig10205_at Unigene 35 Rice Locus = LOC_Os04g50710 Description for best rice BLAST hit to Unigene 35 member = pathogenesis-related 10 protein PR10-1, putative; E value = 7E-46 BLAST hit in the rice genome = pathogenesis-related 10 protein PR10-1, putative
Probe for Locus	HAR35_18998
Locus	POPA1_0915