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GrainGenes Marker Report: POPA1_0920

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Locus	POPA1_0920
Type	SNP
Synonym	Synonym 11_10920
Chromosome	7H
Chromosome Arm	7HS
Map	Hordeum-OPA-2009-7H 31.75 Hordeum-OPA123-2008-7H 31.75 Hordeum-OPAConsensus-2011-7H 26.14
	[ Show Nearby Loci ]
Map Data	Barley, OPA 2009, Consensus Barley, OPA 2011, Consensus Barley, OPA123-2008, Consensus
Probe	HAR35_4661
Reference	Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Data Source	Close, Timothy J.
Remark	[ Hide all but 1 of 12 ] Marker name in barley Pilot OPA1 = 1_0920 Marker name in barley OPA1 = 11_10920 Original SNP name = 7634-659 Most representative HarvEST:Barley Assembly #32 Unigene = 7634 Most representative HarvEST:Barley Assembly #35 Unigene = 4661 HarvEST Unigene 35 Probe Set = Contig10233_at; Contig10233_s_at Unigene 35 Rice Locus = LOC_Os06g05350 Description for best rice BLAST hit to Unigene 35 member = DNA-binding protein p24, putative, expressed; E value = 7E-79 Original SNP name = ABC06931_1_38 HarvEST Unigene 35 Probe Set = Contig10233_at, Contig10233_s_at Description for best rice BLAST hit to Unigene 35 member = protein DNA-binding protein p24, putative, expressed; E value = 7E-79 BLAST hit in the rice genome = DNA-binding protein p24, putative, expressed
Probe for Locus	HAR35_4661
Locus	POPA1_0920
General Remarks	Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type	cDNA
Source Species	Hordeum vulgare