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GrainGenes Marker Report: POPA1_0939

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Locus	POPA1_0939
Type	SNP
Synonym	Other name 11_10939 BOPA1_11_10939 BOPA1_7848-441 Synonym 11_10939
Chromosome	6H
Chromosome Arm	6HS
Map	Barley, 2012 9KSNP 6H 35.6 [ Show all 6 ]
	[ Show Nearby Loci ]
QTL with Locus Marker	QSfnb-6H-33.74
Map Data	Barley, 2012 9KSNP [ Show all 6 ]
Species	Hordeum vulgare
Probe	HAR35_4814 i_11_10939
Reference	Comadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392. Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582. Szucs P et al. (2009) An Integrated Resource for Barley Linkage Map and Malting Quality QTL Alignment The Plant Genome 2:134-140.
Data Source	Close, Timothy J.
Remark	[ Hide all but 1 of 10 ] Marker name in barley Pilot OPA1 = 1_0939 Marker name in barley OPA1 = 11_10939 Original SNP name = 7848-441 Most representative HarvEST:Barley Assembly #32 Unigene = 7848 Most representative HarvEST:Barley Assembly #35 Unigene = 4814 HarvEST Unigene 35 Probe Set = Contig10538_at Unigene 35 Rice Locus = LOC_Os10g11340 Description for best rice BLAST hit to Unigene 35 member = oxidoreductase acting on NADH or NADPH nitrogenous group as acceptor, putative, expressed; E value = 4E-55 Description for best rice BLAST hit to Unigene 35 member = protein oxidoreductase acting on NADH or NADPH nitrogenous group as acceptor, putative, expressed; E value = 4E-55 BLAST hit in the rice genome = oxidoreductase acting on NADH or NADPH nitrogenous group as acceptor, putative, expressed
Probe for Locus	HAR35_4814
Locus	POPA1_0939
General Remarks	Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type	cDNA
Source Species	Hordeum vulgare