Query (optional)   in Class  

GrainGenes Marker Report: POPA1_0953

[Submit comment/correction]

Locus
POPA1_0953
Type
SNP
Synonym
Other name12_10953
BOPA2_12_10953
Synonym12_10953
Chromosome
5H
Chromosome Arm
5HL
Map
Hordeum-OPA-2009-5H75.4
Hordeum-OPA123-2008-5H75.4
Hordeum-OPAConsensus-2011-5H63.93
Hordeum-OWB-OPA2008-5H82.772
[ Show Nearby Loci ]
Map Data
Barley, OPA 2009, Consensus
Barley, OPA 2011, Consensus
Barley, OPA123-2008, Consensus
Barley, OWB, OPA2008
Species
Hordeum vulgare
Probe
HAR35_19062
i_12_10953
Reference
ReferenceComadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392.
ReferenceClose TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
ReferenceSzucs P et al. (2009) An Integrated Resource for Barley Linkage Map and Malting Quality QTL Alignment The Plant Genome 2:134-140.
Data Source
Close, Timothy J.
Remark
[ Hide all but 1 of 11 ]
Marker name in barley Pilot OPA1 = 1_0953
Marker name in barley OPA1 = 12_10953
Original SNP name = 8107-154
Most representative HarvEST:Barley Assembly #32 Unigene = 8107
Most representative HarvEST:Barley Assembly #35 Unigene = 19062
HarvEST Unigene 35 Probe Set = Contig10522_at
Unigene 35 Rice Locus = LOC_Os09g25690
Description for best rice BLAST hit to Unigene 35 member = conserved hypothetical protein; E value = 8E-54
Marker name in barley OPA2 = 12_10953
Description for best rice BLAST hit to Unigene 35 member = protein conserved hypothetical protein; E value = 8E-54
BLAST hit in the rice genome = conserved hypothetical protein


Probe for Locus
HAR35_19062
Locus
POPA1_0953
General Remarks
Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type
cDNA
Source Species
Hordeum vulgare